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Fibromyalgia

Fibromyalgia Protocol Stage 2: The Microbiome & Heavy Pain

May 19, 2026
✦ Fibromyalgia Protocol ✦

Stage Two: The Microbiome

Addressing the underlying causes of heavy, achy pain  stomach problems, Candida overgrowth, and malabsorption of nutrients.

By Brehan Crawford, MAcOM, LAc  ·  Crawford Wellness

Stage 2 Products  Join Our Community 
Watch: Fibromyalgia Stage Two

Fibromyalgia Protocol Series:  Stage 0  ·  Stage 1  ·  Stage 2  ·  Stage 3  ·  Stage 4  ·  Movement

Rebuilding From the Inside

Now that the roof is patched, let's fix the plumbing.

If you've been through Stage 1 and eliminated the wandering pain we associate with reactivating viruses like Epstein-Barr, you've already laid the groundwork for success here. Congratulations. One factor behind EBV reactivation is the presence of excess biofilm and the critters it hosts  so by using Wind Tea, MicroGuard Plus, and the Tibetan Foot Soak while doing self-massage and nasal humming to break loose biofilm, you got a jump start on what we're doing now.

The focus for Stage 2 is on the gastrointestinal microbiome — because it has to be. Research has shown a clear link between disordered digestive function and chronic pain. IBS patients are 40 to 80 percent more likely to experience migraine, fibromyalgia, and depression. The heavy, achy pain we're addressing here is very similar to what patients with osteoarthritis describe — and research has also shown that osteoarthritis is more likely to develop in patients with a disordered microbiome.

If you haven't been through Stages 0 and 1, you can still start here — but I recommend going back through the foundation and the immune system work, especially if you have pain that wanders from place to place.

"Candida by itself isn't a problem — it's a fungal yeast that's a universal member of the human microbiome. Everyone has it. The problem comes when it grows out of control relative to other species, especially the flora we associate with good health and long life."

— Brehan Crawford, MAcOM, LAc

Candida, Biofilm, and Heavy Pain

Candida is opportunistic. It builds biofilms throughout your GI tract — biofilms that should be protective, guarding the gut lining against damage from acid and foreign particles. And that same biofilm provides a breeding ground for normal bacterial flora to live in. The problem is what happens when those normal bacteria are killed — whether from an immune response to an infectious illness or by using a prescription antibiotic.

When the normal flora are disrupted, Candida can and often does grow out of control to fill in the gaps. This prevents your normal flora from growing back easily, and that same mucus can become a breeding ground for bacteria you don't necessarily want hanging around. These pathogenic microbes can contribute to the development of various disease states — including the heavy, achy pain we're addressing in Stage 2.

Research: The IBS–Fibromyalgia Connection

Studies have shown that IBS patients are 40 to 80 percent more likely to also experience migraine, fibromyalgia, and depression. Additionally, patients with a disordered microbiome are more likely to develop osteoarthritis — a condition whose heavy, achy pain closely mirrors what we see in Stage 2 fibromyalgia. Addressing the gut isn't just about digestion; it's about resolving pain at its source.

Nutrition for Stage 2

A Moderate Diet — Not a Restrictive One

If you've looked around on the internet about nutrition and fibromyalgia, you've probably seen people recommending everything from keto diets to vegan diets to water fasts to coffee enemas. And while drastic restrictive diets that focus on eating a very specific way can help some people, they aren't sustainable for most folks long-term. The health and wellness culture around these diets often promotes behavior that can isolate people socially or push them toward disordered eating — which we'd really like to avoid.

After working with thousands of fibromyalgia patients for over a decade, what I find works best is to outline basic nutritional principles of a moderate diet. I want you to eat with your family and friends. I want you to enjoy everything delicious that life has to offer. And I want you to honor your medical history and limits when it comes to certain areas.

Start by remembering what your grandmother tried to tell you: eat slowly, chew your food, be grateful for what you're given, and try to give back when you can. Food is love and it should be shared.

The Basic Template

Protein, vegetables, whole grains, and herbs and spices. Small, easily digested meals. Don't eat too much meat, oily food, sugar, or grains — and generally, just don't eat too much.

Season Generously

Most spices promote microbiome diversity. Turmeric and chili peppers support cardiovascular health. Rosemary, thyme, sage, and oregano are rich in volatile oils that are powerfully anti-fungal.

Ginger Tea

A cup before breakfast and lunch warms the stomach to assist digestion and moves blood and gases like nitric oxide to reduce inflammation and pain. Skip it at night — it may affect sleep quality.

On Probiotics & Ferments

Approach probiotics with a healthy dose of skepticism — we do. And please, no kombucha. On the other hand, you won't usually go wrong with sauerkraut and kimchi if you tolerate fermented vegetables well. Both are excellent for encouraging the growth of healthy gut flora. Ferments have a long tradition of use for GI health — especially the warmer ones like kimchi for reducing the negative effects of environmental cold and dampness on the body.

Exercise — Abdominal Self-Massage

Get a Tummy Rub After Every Meal

Next to eating right, taking the right medicines, and being in nature, abdominal self-massage is one of the best things you can do to promote digestive and microbial health. Every time you do it, you're encouraging peristalsis, helping your body create more enzymes and stomach acid, secreting bile, and promoting the smooth distribution of gases that significantly impact overall wellness. It's also extremely relaxing and feels really good.

It's easy to overthink self-massage. More important than doing it perfectly is to just do it. Go for a five-minute leisurely stroll around your yard, neighborhood, or living room every time you eat — while rubbing your hands around your tummy — and you'll notice better digestion pretty quickly.

Best Practice Technique

1. Stand up. Relax your knees. Pooch out your tummy.

2. Cross one hand over the other and pull your stomach in toward your spine. Maintain that pressure in both directions.

3. Move your hands around in a great big circle — from your ribs all the way to your pubis — about 30 to 40 times.

4. Bob your knees a little to move your hips up and down, and twist your waist side to side for extra effect.

5. Switch directions and go the other way for the same number. It doesn't matter if you start clockwise or counterclockwise — just do both.

Research: Abdominal Massage

Abdominal massage has been studied in a randomized controlled trial and shown to help relieve constipation. If your bowels are too loose, it can make things slightly worse at first — but almost always helps people find a healthy middle after a few days of consistent practice, especially combined with the botanicals below. Over 90% of the body's serotonin is produced in the gut, making abdominal health central to both mood and pain perception.

For a visual demonstration of the abdominal massage technique, see the Movement Protocol.

"I want you to eat with your family and friends. I want you to enjoy everything delicious that life has to offer. And I want you to honor your medical history and limits. We're seeking balance here — usually nothing drastic is needed."

— Brehan Crawford

Botanical Medicines

The Stage 2 Protocol: Three Products Working Together

1. Warm Hearth Tea (Huo Xiang Zheng Qi Tang)

The Huo Xiang Zheng Qi formula is one of the most widely used digestive formulas in Chinese medicine. It's sold over-the-counter in China to treat damp-type conditions like food poisoning, traveler's diarrhea, and summer flu. It contains a powerhouse of compounds for eliminating the damp-type heavy, whole-body pain of Stage 2:

✦   Magnolol — One of our favorite anti-fungal compounds

✦   Curcumin — A potent anti-inflammatory and antioxidant

✦   Baicalin — Another powerful anti-inflammatory

✦   Quercetin — For regulating histamines

This tea can also be used as a summer and autumn drink to increase sweating and promote healthy fluid metabolism — or in high-exposure environments to prevent the onset of viral "damp plague" type diseases. It's also excellent for treating the damp-type fibromyalgia flares associated with new viral infection or other immune system activation.

Dosage: 1–2 bags per day, brewed and sipped throughout the day.

2. Aquada (Er Miao Wan)

Aquada is a super-premium version of the classical Chinese formula Er Miao Wan — or "Double Awesome Pills" — that combines Cang Zhu (Red Atractylodes) and Huang Bai (Phellodendron). Two of the most potent substances on earth for regulating microbial health.

The berberine in Huang Bai gives Aquada strong anti-fungal and anti-bacterial properties, while Cang Zhu provides volatile anti-fungal compounds that restore healthy water metabolism, starve fungus of sugars, and eliminate damp-type heavy pain.

Dosage: A small dose with every meal.

3. MicroGuard Plus

An Imperial-grade herbal formula containing botanical extracts to promote a healthy and diverse microbiome. Traditionally used to relieve bloating, cramps, and fatigue after eating, irritable bowel, food sensitivities, nausea and poor appetite related to excess dampness and what Chinese Medicine calls "food stagnation" — over-consumption of rich, fatty, sweet foods. In other words, the Standard American Diet.

Dosage: One layer of pellets on the inside of the vial cap with every meal.

Browse Stage 2 Products 

Stage 2 Lifestyle Summary

Maintaining a healthy microbiome not only allows you to address the heavy, achy pains of Stage 2 — it also offers relief from a host of gastrointestinal disorders, including IBS. To achieve the optimal microbial environment, you need to consider what lifestyle factors are discouraging the growth of good bacteria and promoting the proliferation of fungus and other pathogenic organisms.

Reduce

Sweet, rich, or sticky foods. Most dairy products. Alcohol. Refined grains and sugars.

Include

Ginger tea before meals. Sauerkraut or kimchi. Fragrant spices. Gently cooked vegetables and whole grains.

Practice

Abdominal self-massage after every meal. Gentle intermittent fasting if you tolerate it. Continue Stage 1 exercises.

The success marker for Stage 2 is the resolution of heavy, achy pain — and noticeable improvement in digestive symptoms. Once you're there, it's time to move on to Stage 3 and address the nervous system.

Next in the Series

Stage 3: Trauma & the Nervous System

Resolve the electrical and burning pain of fibromyalgia by healing cortisol dysregulation, dysautonomia, and the lasting effects of trauma.

Read Stage 3   Browse Products

Full Series:  Stage 0  ·  Stage 1  ·  Stage 2  ·  Stage 3  ·  Stage 4  ·  Movement

This content is for educational purposes only and does not constitute medical advice. Please consult with your physician before beginning any new exercise program, before changing your diet, or before starting or stopping any supplement or medication. This post contains affiliate links — if you purchase through our link, we may receive a commission at no additional cost to you. Individual results vary and are not guaranteed.  ·  Join the Community  ·  © Crawford Wellness · crawford-wellness.com


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